Solar energy paper index
A benchmark suite of intracellular Boolean model variants and multiscale simulations for computational biology
One-line summary
A solar energy research paper on A benchmark suite of intracellular Boolean model variants and multiscale simulations for computational biology.
Engineering notes
Engineering notes will be added by the Power for Solar editorial team.
Chinese explanation / 中文解读
中文解读待补充：本站会优先为光伏效率、钙钛矿太阳能电池、储能技术、太阳能热利用、BIPV、并网技术等高价值论文补充中文说明。
Original abstract
We present PhysiBench, an open resource for developing and evaluating computational methods in systems biology including a benchmark suite of 612 executable intracellular Boolean regulatory network variants and a dataset of 120,000 time-resolved multiscale stochastic simulations. The benchmark models are derived from seven published Boolean networks spanning cell-cycle control, developmental patterning, cancer signaling, immune response, and cell-fate decisions, and are executable in the PhysiBoSS/PhysiCell multiscale simulation framework. Model variants are generated through mutation-based model construction, online behavioral filtering, and offline sensitivity evaluation. The simulation dataset is produced from 60 selected models under systematically sampled stimulation protocols and fixed model-level initial configurations. Each trajectory is linked to its model identifier, input-parameter file, stochastic seed, and cell-level output file. PhysiBench supports direct simulation, surrogate modeling, data-driven inference, simulation-based optimization, and comparative benchmarking. Technical validation includes file-integrity and executability checks, graph-based structural diversity analyses, and behavioral heterogeneity assessment from multiscale simulation outputs.
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